STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK35250.1Hypothetical protein. (581 aa)    
Predicted Functional Partners:
SEK35366.1
Phosphate ABC transporter substrate-binding protein, PhoT family.
 
    0.867
SEM90590.1
Outer membrane transport energization protein ExbD.
 
    0.786
SEK94880.1
Outer membrane transport energization protein ExbD.
 
    0.775
SEM90625.1
Outer membrane transport energization protein ExbD.
  
     0.763
SEM90555.1
Outer membrane transport energization protein ExbB.
 
    0.719
SEM90664.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
     0.663
SEM95488.1
Outer membrane transport energization protein TonB (TC 2.C.1.1.1).
 
     0.652
SEL98049.1
Family of unknown function.
  
     0.603
SEK35783.1
Hypothetical protein.
  
     0.598
SEM33294.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.594
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.