STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK82586.1ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB. (128 aa)    
Predicted Functional Partners:
SEK82538.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
 0.999
SEK82629.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
 0.999
SEK82674.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
 
 0.996
SEK60372.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.970
SEK72738.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase.
 
 
 0.942
SEN28581.1
Ferredoxin-NADP reductase.
  
 
 0.868
SEM21313.1
phenylacetate-CoA ligase.
 
 
 0.794
SEL08020.1
Phenylacetic acid degradation protein paaN.
 
  
 0.731
SEN78848.1
ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.709
SEM56154.1
FeS assembly SUF system protein.
  
 
 0.687
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
Server load: low (24%) [HD]