STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM41691.1Response regulator receiver domain-containing protein. (125 aa)    
Predicted Functional Partners:
SEM39484.1
Signal transduction histidine kinase.
 
 0.996
SEK72835.1
PAS domain S-box-containing protein.
 
0.993
SEM59643.1
PAS domain S-box-containing protein.
 
0.989
SEN24691.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.986
SEM44046.1
Signal transduction histidine kinase.
  
0.931
SEM07869.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.926
SEL71374.1
Signal transduction histidine kinase.
 
  0.924
SEL33807.1
PAS domain S-box-containing protein.
 
 0.921
SEN93350.1
PAS domain S-box-containing protein.
 
 
 0.910
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. In the N-terminal section; belongs to the complex I 30 kDa subunit family.
    
   0.909
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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