STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM32326.1Starch-binding associating with outer membrane. (630 aa)    
Predicted Functional Partners:
SEM32293.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.957
SEM32360.1
Protein of unknown function.
 
     0.944
SEN43119.1
Glycosyl hydrolase family 76.
  
 
   0.823
SEN43073.1
Glycosyl hydrolase family 76.
  
 
   0.807
SEM65455.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.747
SEN14608.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.669
SEK41984.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.660
SEL59105.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.657
SEL59182.1
Protein of unknown function.
  
     0.656
SEN45173.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.654
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.