STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM56726.1Outer membrane protein beta-barrel domain-containing protein. (286 aa)    
Predicted Functional Partners:
SEM84177.1
Outer membrane protein OmpA.
  
 
 0.824
SEN85310.1
Tetratricopeptide repeat-containing protein.
  
     0.767
SEM84483.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.755
SEK38222.1
Probable protein-translocating porin PorT.
 
   
 0.750
SEK55604.1
Gliding motility-associated lipoprotein GldB.
  
     0.747
SEN63345.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.746
SEN63957.1
Gliding motility-associated lipoprotein GldJ/gliding motility-associated lipoprotein GldJ,TIGR03530.
  
     0.744
SEL49014.1
Gliding motility-associated C-terminal domain-containing protein.
  
    0.741
SEK92324.1
Gliding motility-associated lipoprotein GldD.
  
     0.738
SEN07902.1
Hypothetical protein.
  
     0.737
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.