STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM82152.1TPR repeat-containing protein. (493 aa)    
Predicted Functional Partners:
hisS
histidyl-tRNA synthetase.
  
    0.841
SEM17880.1
Hypothetical protein.
  
     0.649
SEM65177.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
 
    0.633
SEL76473.1
Hypothetical protein.
  
    0.581
SEK82916.1
Hypothetical protein.
  
     0.580
SEN26873.1
PA14 domain-containing protein.
  
     0.580
SEM84483.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.578
SEK62348.1
Hypothetical protein.
  
    0.577
SEL97574.1
PA14 domain-containing protein.
  
     0.575
SEM82230.1
Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
       0.570
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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