STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM75662.1TonB-linked outer membrane protein, SusC/RagA family. (1132 aa)    
Predicted Functional Partners:
SEM75709.1
SusD family protein.
 
     0.932
SEN79005.1
Starch-binding associating with outer membrane.
  
     0.762
SEN69399.1
Starch-binding associating with outer membrane.
  
     0.761
SEL77089.1
Starch-binding associating with outer membrane.
  
     0.754
SEM00055.1
Starch-binding associating with outer membrane.
  
     0.730
SEN24007.1
Starch-binding associating with outer membrane.
  
     0.726
SEM61916.1
Starch-binding associating with outer membrane.
  
     0.724
SEM75744.1
Endo-1,4-beta-xylanase, GH35 family; Belongs to the glycosyl hydrolase 28 family.
       0.714
SEM47873.1
SusD family protein.
  
     0.691
SEN42987.1
Starch-binding associating with outer membrane.
  
     0.686
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.