STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN24986.1Two component transcriptional regulator, LuxR family. (208 aa)    
Predicted Functional Partners:
SEK72835.1
PAS domain S-box-containing protein.
   
 0.984
SEM39484.1
Signal transduction histidine kinase.
   
 0.974
SEM59643.1
PAS domain S-box-containing protein.
   
 0.974
SEK47246.1
Tetratricopeptide repeat-containing protein.
  
 0.939
SEM43834.1
Histidine kinase.
  
 0.936
SEM39878.1
Signal transduction histidine kinase.
  
 0.912
SEM44046.1
Signal transduction histidine kinase.
   
 0.911
SEM02769.1
Hypothetical protein.
 
 0.901
SEM43155.1
Histidine kinase.
 
  0.889
SEM67964.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.866
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.