STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN40110.1Two component transcriptional regulator, LytTR family. (239 aa)    
Predicted Functional Partners:
SEN40058.1
Histidine kinase.
 
   0.954
SEK78066.1
GAF domain-containing protein.
 
 
 0.891
SEK77390.1
Histidine kinase.
  
  0.850
SEL54417.1
Two component regulator propeller.
  
  0.839
SEM37492.1
Histidine kinase.
  
  0.834
SEN54678.1
Histidine kinase.
  
  0.827
SEL98906.1
Two component regulator propeller.
  
  0.819
SEM61271.1
Histidine kinase.
 
   0.808
SEL77469.1
Histidine kinase.
 
   0.807
SEL81737.1
Histidine kinase.
  
   0.807
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.