STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN53123.1Hypothetical protein. (281 aa)    
Predicted Functional Partners:
SEN53164.1
Calcineurin-like phosphoesterase.
 
     0.855
SEN53070.1
HD domain-containing protein.
 
     0.762
SEN83385.1
Surface antigen.
 
     0.704
SEK61592.1
Hypothetical protein.
  
     0.503
SEK62655.1
Hypothetical protein.
  
     0.469
SEN75085.1
Protein of unknown function.
  
     0.441
SEN52919.1
Thioredoxin-related protein.
 
     0.438
SEM43349.1
Nucleotide-binding universal stress protein, UspA family.
  
     0.429
ppk-2
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
       0.420
SEL01329.1
Hypothetical protein.
  
     0.411
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.