STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMR_02200Asp/Glu racemase family protein. (229 aa)    
Predicted Functional Partners:
DMR_05910
Putative asparaginase.
    
 0.925
DMR_00560
Asparagine synthetase.
    
 0.918
DMR_42760
Asparagine synthetase.
    
 0.918
DMR_42790
Asparagine synthetase.
    
 0.918
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
    
 0.917
aspA
Aspartate ammonia-lyase.
    
 0.914
DMR_02490
Putative aspartate ammonia-lyase.
    
 0.914
DMR_34740
Aminotransferase.
    
 0.905
DMR_45930
Aspartate aminotransferase.
    
 0.905
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.904
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.