Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DMR_02480Fe hydrogenase. (585 aa)    
Predicted Functional Partners:
nuoF
NADH-quinone oxidoreductase chain F.
 
 
 0.999
DMR_07840
Putative NAD-reducing hydrogenase subunit.
 
 
 0.999
DMR_02450
Respiratory-chain NADH dehydrogenase 24 kDa subunit family protein.
 
 0.986
DMR_02460
Putative NAD-reducing hydrogenase subunit.
 
 
 0.986
nifJ
Pyruvate-flavodoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
 0.963
DMR_43540
Formate dehydrogenase alpha subunit; Fragment; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.961
DMR_43550
Formate dehydrogenase alpha subunit; Fragment.
 
 
 0.961
DMR_07890
Putative hydrogenase-4 component I.
  
 
 0.956
DMR_07850
Putative NAD-reducing hydrogenase subunit.
 
 0.952
DMR_07830
Putative Fe hydrogenase.
  
 
 0.950
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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