STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMR_06380Flp/Fap pilin component family protein. (55 aa)    
Predicted Functional Partners:
DMR_33860
Flp pilus assembly CpaB domain protein.
 
  
 0.781
DMR_33830
Hypothetical protein.
 
  
 0.764
DMR_33850
Bacterial type II and III secretion system protein family protein; Belongs to the bacterial secretin family.
 
  
 0.663
DMR_33810
Hypothetical membrane protein.
 
  
 0.625
DMR_35040
Hypothetical membrane protein.
  
  
 0.608
DMR_33800
Hypothetical membrane protein.
 
  
 0.576
DMR_14170
Hypothetical protein.
 
  
 0.573
DMR_06370
Thioesterase superfamily domain protein.
       0.516
DMR_33820
Type II/IV secretion system protein family protein.
  
  
 0.516
DMR_14150
Hypothetical protein.
  
  
 0.473
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.