Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DMR_09080Putative fatty-acid--CoA ligase. (635 aa)    
Predicted Functional Partners:
DMR_09090
Putative ABC transporter ATP-binding protein.
 
  
 0.954
DMR_03050
Putative acid--CoA ligase.
 
 
0.932
DMR_14100
Putative acid--CoA ligase.
 
 
0.932
DMR_09060
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.913
DMR_09070
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.897
DMR_09050
ABC transporter substrate binding protein precursor.
 
  
 0.893
DMR_09040
ABC transporter ATP-binding protein.
 
  
 0.863
DMR_42700
Putative acyl-CoA dehydrogenase.
  
 0.833
DMR_09030
Putative phenylacetate-coenzyme A ligase.
 
    0.746
DMR_13870
Hypothetical protein.
  
 
 0.723
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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