STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMR_09200Putative transposase orf1 for insertion sequence element. (116 aa)    
Predicted Functional Partners:
DMR_39540
Putative serine/threonine-protein kinase.
 
 
 0.818
DMR_09190
Putative transposase orf2 for insertion sequence element.
 
     0.812
DMR_22780
Hypothetical protein.
 
 
 0.802
rsmB
rRNA (cytosine-C(5)-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.764
DMR_09180
Putative transposase orf3 for insertion sequence element.
 
     0.721
DMR_21540
Cytochrome c3.
 
 
   0.701
DMR_39370
Hypothetical protein.
    
 0.662
glpF
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.659
ppiB
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.643
DMR_09210
Putative two-component hybrid sensor and regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.630
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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