Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DMR_22650ABC transporter substrate binding protein precursor. (415 aa)    
Predicted Functional Partners:
DMR_22660
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.954
DMR_22670
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.947
DMR_22680
ABC transporter ATP-binding protein.
 
  
 0.918
DMR_22690
ABC transporter ATP-binding protein.
 
  
 0.886
DMR_11360
ABC transporter ATP-binding protein.
 
  
 0.842
DMR_45580
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.800
DMR_45590
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.799
DMR_22440
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.784
DMR_22430
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.756
DMR_05870
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.747
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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