STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMR_22910Putative glycosyltransferase. (560 aa)    
Predicted Functional Partners:
DMR_28260
Putative glycosyltransferase.
  
  
 0.762
DMR_26200
Putative ABC transporter permease protein.
  
  
 0.710
DMR_43030
Hypothetical protein.
 
     0.705
xanB
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.648
DMR_40300
Putative glycosyltransferase.
 
  
 0.645
DMR_13650
Putative glycosyltransferase.
 
     0.599
fliN
Flagellar motor switch protein FliN.
    
   0.583
DMR_40270
UDP-N-acetylglucosamine dehydratase/epimerase.
  
  
 0.570
DMR_17870
Acyltransferase 3 domain protein.
 
   
 0.559
DMR_22900
Hypothetical protein; Belongs to the SUA5 family.
       0.554
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.