Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DMR_22010 | DMR_26040 | DMR_22010 | DMR_26040 | Aminotransferase. | Peptidase M20 family protein. | 0.920 |
DMR_22010 | argG | DMR_22010 | DMR_26530 | Aminotransferase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.401 |
DMR_22010 | dapF | DMR_22010 | DMR_03800 | Aminotransferase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.940 |
DMR_26030 | DMR_26040 | DMR_26030 | DMR_26040 | Hypothetical protein. | Peptidase M20 family protein. | 0.659 |
DMR_26040 | DMR_22010 | DMR_26040 | DMR_22010 | Peptidase M20 family protein. | Aminotransferase. | 0.920 |
DMR_26040 | DMR_26030 | DMR_26040 | DMR_26030 | Peptidase M20 family protein. | Hypothetical protein. | 0.659 |
DMR_26040 | argC | DMR_26040 | DMR_05160 | Peptidase M20 family protein. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.754 |
DMR_26040 | argD | DMR_26040 | DMR_45620 | Peptidase M20 family protein. | Acetylornithine/succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.940 |
DMR_26040 | argG | DMR_26040 | DMR_26530 | Peptidase M20 family protein. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.726 |
DMR_26040 | dapF | DMR_26040 | DMR_03800 | Peptidase M20 family protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.937 |
DMR_26040 | fliG | DMR_26040 | DMR_45060 | Peptidase M20 family protein. | Flagellar motor switch protein FliG. | 0.730 |
DMR_26040 | glmS | DMR_26040 | DMR_43340 | Peptidase M20 family protein. | Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.769 |
DMR_26040 | gmk | DMR_26040 | DMR_32860 | Peptidase M20 family protein. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.627 |
DMR_26040 | prfB | DMR_26040 | DMR_26100 | Peptidase M20 family protein. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.661 |
argC | DMR_26040 | DMR_05160 | DMR_26040 | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | Peptidase M20 family protein. | 0.754 |
argC | argD | DMR_05160 | DMR_45620 | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | Acetylornithine/succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.996 |
argC | argG | DMR_05160 | DMR_26530 | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.938 |
argD | DMR_26040 | DMR_45620 | DMR_26040 | Acetylornithine/succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Peptidase M20 family protein. | 0.940 |
argD | argC | DMR_45620 | DMR_05160 | Acetylornithine/succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.996 |
argD | argG | DMR_45620 | DMR_26530 | Acetylornithine/succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.937 |
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