STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMR_40390Hypothetical protein. (248 aa)    
Predicted Functional Partners:
DMR_40360
DegT/DnrJ/EryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family.
   
 
 0.823
DMR_40370
Hypothetical protein.
     
 0.800
rmlB-2
Putative dTDP-glucose 4,6-dehydratase.
  
  
 0.794
DMR_40380
Hypothetical protein.
  
    0.788
DMR_40350
Nucleotidyl transferase domain protein.
     
 0.784
DMR_12710
acetyl-CoA carboxylase carboxyl transferase alpha/beta subunit.
   
   0.624
DMR_02940
Putative chemotaxis protein CheC.
    
   0.610
cheC
Chemotaxis protein CheC.
    
   0.610
cheY-10
Chemotaxis protein CheY.
    
   0.610
DMR_03840
Peptidase M22 family protein.
  
 
 0.596
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.