STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMR_42840Hypothetical protein. (578 aa)    
Predicted Functional Partners:
DMR_42830
Hypothetical protein.
 
 
 0.972
DMR_42860
Putative ABC transporter permease protein.
 
 
 0.932
DMR_42850
Putative ABC transporter ATP-binding protein.
   
 
 0.916
DMR_02890
Hypothetical protein.
 
 
 0.915
DMR_42810
Hypothetical membrane protein.
 
     0.873
DMR_08320
Efflux system protein.
 
 
 0.850
DMR_02210
HlyD family secretion protein.
  
 
 0.827
DMR_08170
Secretion protein HlyD family protein.
  
 
 0.827
DMR_13480
HlyD family secretion protein.
  
 
 0.827
DMR_22940
Secretion protein HlyD family protein.
  
 
 0.827
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.