Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DMR_43390Hypothetical protein. (337 aa)    
Predicted Functional Partners:
DMR_43380
Hypothetical protein.
       0.773
DMR_43400
Two-component hybrid sensor and regulator.
       0.544
DMR_44420
Putative DNA-binding protein.
  
  
 0.541
DMR_27580
Iron-sulfur binding protein.
  
  
 0.533
DMR_11820
Putative DNA-binding protein.
  
  
 0.522
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.505
DMR_38690
Hypothetical protein.
 
    0.504
DMR_25930
Hypothetical membrane protein.
  
     0.453
nifU
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.447
DMR_15430
Hypothetical protein.
  
    0.438
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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