Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hydNElectron transport protein HydN. (173 aa)    
Predicted Functional Partners:
DMR_43510
Putative Fe hydrogenase.
   
 
 0.966
nuoF
NADH-quinone oxidoreductase chain F.
  
 
 0.889
DMR_07840
Putative NAD-reducing hydrogenase subunit.
  
 
 0.889
DMR_07890
Putative hydrogenase-4 component I.
  
 
 0.884
DMR_02480
Fe hydrogenase.
  
 
 0.880
nifJ
Pyruvate-flavodoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
 0.875
fdhB-2
Formate dehydrogenase beta subunit.
 
   
 0.803
DMR_43520
Putative electron transport protein.
 
    
0.795
DMR_07830
Putative Fe hydrogenase.
   
 
 0.784
DMR_43540
Formate dehydrogenase alpha subunit; Fragment; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.780
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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