STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMR_43550Formate dehydrogenase alpha subunit; Fragment. (139 aa)    
Predicted Functional Partners:
DMR_43540
Formate dehydrogenase alpha subunit; Fragment; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     0.994
DMR_07830
Putative Fe hydrogenase.
 
 
 0.991
nuoF
NADH-quinone oxidoreductase chain F.
 
 
 0.980
DMR_07840
Putative NAD-reducing hydrogenase subunit.
 
 
 0.980
DMR_02480
Fe hydrogenase.
 
 
 0.968
DMR_43510
Putative Fe hydrogenase.
  
 
 0.954
DMR_07890
Putative hydrogenase-4 component I.
  
 
 0.941
fdhD
FdhD protein.
 
 
 0.937
nuoD-2
NADH-quinone oxidoreductase chain B/C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
 
 0.910
DMR_02750
Ech hydrogenase subunit EchC; Belongs to the complex I 20 kDa subunit family.
  
 
 0.881
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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