STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMR_45380ThiJ/PfpI family protein. (278 aa)    
Predicted Functional Partners:
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.774
rpoH
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.691
DMR_45370
AraC family transcriptional regulator.
 
    
0.683
DMR_02230
Hypothetical protein.
 
    0.648
DMR_01310
Dehydrogenase.
  
    0.620
DMR_02350
Isochorismatase hydrolase family protein.
 
    0.612
DMR_40620
TetR family transcriptional regulator.
  
   
 0.601
umuD
UmuD protein; Belongs to the peptidase S24 family.
   
 
 0.591
DMR_26460
AraC family transcriptional regulator.
 
 
 0.580
DMR_24740
Xre family DNA-binding protein.
   
 
 0.578
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.