Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DMR_22210 | DMR_30660 | DMR_22210 | DMR_30660 | Iron-sulfur binding protein. | Hypothetical protein. | 0.792 |
DMR_22210 | DMR_46290 | DMR_22210 | DMR_46290 | Iron-sulfur binding protein. | Hypothetical protein. | 0.983 |
DMR_22210 | ahcY | DMR_22210 | DMR_43440 | Iron-sulfur binding protein. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.927 |
DMR_22210 | asd | DMR_22210 | DMR_16050 | Iron-sulfur binding protein. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.900 |
DMR_22210 | cysM | DMR_22210 | DMR_30710 | Iron-sulfur binding protein. | Cysteine synthase B. | 0.934 |
DMR_22210 | hom | DMR_22210 | DMR_28990 | Iron-sulfur binding protein. | Homoserine dehydrogenase. | 0.900 |
DMR_22210 | metC | DMR_22210 | DMR_37170 | Iron-sulfur binding protein. | Putative cystathionine beta-lyase. | 0.902 |
DMR_22210 | metC-2 | DMR_22210 | DMR_37180 | Iron-sulfur binding protein. | Putative cystathionine beta-lyase. | 0.902 |
DMR_22210 | metH | DMR_22210 | DMR_21130 | Iron-sulfur binding protein. | Methionine synthase. | 0.917 |
DMR_22210 | metY | DMR_22210 | DMR_07630 | Iron-sulfur binding protein. | O-acetylhomoserine (thiol)-lyase. | 0.904 |
DMR_30660 | DMR_22210 | DMR_30660 | DMR_22210 | Hypothetical protein. | Iron-sulfur binding protein. | 0.792 |
DMR_30660 | DMR_46290 | DMR_30660 | DMR_46290 | Hypothetical protein. | Hypothetical protein. | 0.839 |
DMR_30660 | cysM | DMR_30660 | DMR_30710 | Hypothetical protein. | Cysteine synthase B. | 0.572 |
DMR_46290 | DMR_22210 | DMR_46290 | DMR_22210 | Hypothetical protein. | Iron-sulfur binding protein. | 0.983 |
DMR_46290 | DMR_30660 | DMR_46290 | DMR_30660 | Hypothetical protein. | Hypothetical protein. | 0.839 |
DMR_46290 | ahcY | DMR_46290 | DMR_43440 | Hypothetical protein. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.900 |
DMR_46290 | asd | DMR_46290 | DMR_16050 | Hypothetical protein. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.916 |
DMR_46290 | cysM | DMR_46290 | DMR_30710 | Hypothetical protein. | Cysteine synthase B. | 0.920 |
DMR_46290 | hom | DMR_46290 | DMR_28990 | Hypothetical protein. | Homoserine dehydrogenase. | 0.903 |
DMR_46290 | metC | DMR_46290 | DMR_37170 | Hypothetical protein. | Putative cystathionine beta-lyase. | 0.900 |
page 1 of 5