STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79209.1Amino acid permease-associated region; COGs: COG1113 Gamma-aminobutyrate permease and related permease; InterPro IPR004841:IPR002293; KEGG: mem:Memar_1826 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease. (445 aa)    
Predicted Functional Partners:
ADK79211.1
COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: dge:Dgeo_0101 deoxynucleoside kinase; PFAM: deoxynucleoside kinase; SPTR: Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase.
   
   0.607
ADK79240.1
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: hau:Haur_2435 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Putative uncharacterized protein; PFAM: Alpha amylase, catalytic domain.
   
 0.580
ADK79422.1
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: aba:Acid345_1492 alpha amylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Alpha amylase; PFAM: Alpha amylase, catalytic domain.
   
 0.580
ADK79778.1
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR006047:IPR006589:IPR016377; KEGG: str:Sterm_1523 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Putative sucrose phosphorylase; PFAM: Alpha amylase, catalytic domain.
   
 0.580
ADK80045.1
Sucrose phosphorylase; COGs: COG0366 Glycosidase; InterPro IPR006047:IPR006589:IPR016377; KEGG: dol:Dole_0651 sucrose phosphorylase; PFAM: alpha amylase catalytic region; PRIAM: Sucrose phosphorylase; SMART: alpha amylase catalytic sub domain; SPTR: Sucrose phosphorylase; PFAM: Alpha amylase, catalytic domain.
   
 0.580
ADK80472.1
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR006047:IPR006589; KEGG: lbf:LBF_3272 glycosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Glycosidase; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain.
   
 0.580
ADK81848.1
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR006047:IPR006589; KEGG: afl:Aflv_2271 oligo-1,4-1,6-alpha-glucosidase (sucrase-maltase-isomaltase); PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Alpha amylase catalytic region; PFAM: Alpha amylase, catalytic domain.
   
 0.580
ADK79210.1
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR013704:IPR007197; KEGG: cth:Cthe_1094 hypothetical protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM-like protein; PFAM: Domain of unknown function (DUF3362); Radical SAM superfamily; Radical SAM N-terminal.
  
    0.575
trpF
COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798:IPR001240:IPR001468:IPR018208; KEGG: fsu:Fisuc_0176 indole-3-glycerol-phosphate synthase., phosphoribosylanthranilate isomerase; PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate (PRA) isomerase; Belongs to the TrpF family.
   
 
 0.519
ADK82585.1
COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: dsa:Desal_3806 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease.
  
     0.515
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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