STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79384.1KEGG: pca:Pcar_0934 hypothetical protein; SPTR: Putative uncharacterized protein. (308 aa)    
Predicted Functional Partners:
ADK79385.1
KEGG: dps:DP0584 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 0.973
ADK79383.1
Glycyl-radical enzyme activating protein family; COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterProIPR012839:IPR007197:IPR001450:IPR017896:IPR 011352:IPR017900:IPR005829:IPR001989; KEGG: rpc:RPC_1176 glycyl-radical activating protein; PFAM: Radical SAM domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: [Formate-C-acetyltransferase]-activating enzyme; SPTR: Glycyl-radical enzyme activating; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM superfamily; TIGRFAM: glycyl-radical enzyme activating protein family.
 
    0.870
ADK79382.1
Transcriptional regulator, LacI family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: gka:GK2115 transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory proteins, lacI family; family.
       0.727
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.581
ADK82349.1
Glycosyl transferase family 2; InterPro IPR001173; KEGG: caa:Caka_1159 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
  
 
 0.579
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.577
ADK81087.1
KEGG: hmo:HM1_1330 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 0.577
ADK80013.1
Alanyl-tRNA synthetase, class IIc; COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR018164:IPR012947:IPR018165; KEGG: tte:TTE0934 metal-dependent hydrolase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; SPTR: Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain; PFAM: tRNA synthetases class II (A).
   
 0.571
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.571
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.571
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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