STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79515.1COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019196; KEGG: dat:HRM2_32590 predicted ABC-type transport system, membrane protein; PFAM: ABC-type uncharacterised transport system; SPTR: Predicted ABC-type transport system, membrane protein; PFAM: ABC-type uncharacterized transport system. (696 aa)    
Predicted Functional Partners:
ADK79516.1
KEGG: dat:HRM2_32600 predicted ABC-type transport system, membrane protein; SPTR: Predicted ABC-type transport system, membrane protein.
  
 0.984
ADK79517.1
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dol:Dole_2070 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter-related protein; PFAM: ABC transporter.
 
  
 0.957
ADK79514.1
KEGG: dat:HRM2_32580 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.952
ADK80961.1
DNA methylase N-4/N-6 domain protein; COGs: COG0863 DNA modification methylase; InterPro IPR001091:IPR017985:IPR019825:IPR002941; KEGG: dal:Dalk_3764 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6 domain protein; SPTR: DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.661
ADK83205.1
KEGG: tde:TDE1050 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.659
ADK80618.1
Trp repressor; InterPro IPR000831:IPR013335; KEGG: emi:Emin_0550 Trp repressor; PFAM: Trp repressor; SPTR: Trp repressor; PFAM: Trp repressor protein; TIGRFAM: trp operon repressor, proteobacterial.
  
     0.638
ADK79518.1
Protein of unknown function DUF89; COGs: COG1578 conserved hypothetical protein; InterPro IPR002791:IPR014444; KEGG: dol:Dole_1580 hypothetical protein; PFAM: protein of unknown function DUF89; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF89.
       0.533
ADK80156.1
Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: geo:Geob_2854 hypothetical protein; PFAM: aminotransferase class I and II; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II.
  
     0.509
ADK80006.1
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197:IPR006638:IPR006158; KEGG: sat:SYN_02176 Fe-S oxidoreductase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
  
     0.472
ADK83163.1
COGs: COG1533 DNA repair photolyase; KEGG: dat:HRM2_08590 DNA repair photolyase SplB-like protein; SPTR: DNA repair photolyase SplB-like protein.
  
     0.463
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.