STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79553.1HEPN domain protein; COGs: COG2250 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: csc:Csac_0790 HEPN domain-containing protein; PFAM: HEPN domain protein; SMART: HEPN domain protein; SPTR: HEPN domain protein; PFAM: HEPN domain. (131 aa)    
Predicted Functional Partners:
ADK79552.1
InterPro IPR002934; KEGG: rca:Rcas_3922 DNA polymerase beta subunit; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain.
 
 
   0.953
ADK79832.1
InterPro IPR002716; KEGG: paa:Paes_1738 PilT protein domain protein; PFAM: PilT protein domain protein; SPTR: Putative uncharacterized protein; PFAM: PIN domain.
  
     0.495
ADK79551.1
KEGG: gfo:GFO_3473 PilT domain-containing protein; SPTR: PIN domain containing protein; PFAM: PIN domain.
 
     0.471
ADK82514.1
COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: lil:LA0936 hypothetical protein; PFAM: PilT protein domain protein; SPTR: Putative uncharacterized protein; PFAM: PIN domain.
  
     0.413
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.