STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79591.1KEGG: lba:Lebu_1283 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2992). (127 aa)    
Predicted Functional Partners:
ADK82124.1
Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: sth:STH2076 putative transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: Putative transcriptional regulator; PFAM: Transcriptional regulator PadR-like family.
 
   
 0.589
ADK79391.1
YheO domain protein; COGs: COG2964 conserved hypothetical protein; InterPro IPR013559; KEGG: aoe:Clos_1744 YheO domain-containing protein; PFAM: YheO domain protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: YheO-like PAS domain.
  
     0.496
ADK79990.1
Putative lipoprotein; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: cdl:CDR20291_0675 putative lipoprotein; SPTR: Peroxiredoxin.
  
     0.485
ADK79590.1
Amidohydrolase; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: cdl:CDR20291_1989 putative amidohydrolase; PFAM: amidohydrolase; SPTR: Probable amidohydrolase; PFAM: Amidohydrolase family.
       0.473
ADK79288.1
YheO domain protein; COGs: COG2964 conserved hypothetical protein; InterPro IPR013559; KEGG: ckr:CKR_0542 hypothetical protein; PFAM: YheO domain protein; SPTR: Putative uncharacterized protein; PFAM: YheO-like PAS domain.
  
     0.406
ADK79392.1
YheO domain protein; COGs: COG2964 conserved hypothetical protein; InterPro IPR013559; KEGG: dvl:Dvul_1030 YheO domain-containing protein; PFAM: YheO domain protein; SPTR: Putative uncharacterized protein; PFAM: YheO-like PAS domain.
  
     0.400
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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