STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79721.1Type IV pilus assembly PilZ; InterPro IPR009875; KEGG: dpe:Dper_GL13628 GL13628 gene product from transcript GL13628-RA; PFAM: type IV pilus assembly PilZ; SPTR: GL13628; PFAM: PilZ domain. (249 aa)    
Predicted Functional Partners:
cheD
CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
       0.773
ADK79723.1
KEGG: bbz:BbuZS7_0580 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.762
ADK79720.1
Metal dependent phosphohydrolase; COGs: COG3294 conserved hypothetical protein; KEGG: rmr:Rmar_1293 metal dependent phosphohydrolase; SPTR: Putative uncharacterized protein.
       0.620
ADK79724.1
ABC transporter related protein; COGs: COG3839 ABC-type sugar transport systems ATPase components; InterPro IPR003593:IPR003439:IPR005116:IPR017871; KEGG: tma:TM1276 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; SPTR: Multiple sugar-binding transport ATP-binding protein MsmK; PFAM: ABC transporter; TOBE domain.
       0.521
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.