STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79936.1RbsD or FucU transport; InterPro IPR007721; KEGG: ctc:CTC00903 hypothetical protein; PFAM: RbsD or FucU transport; SPTR: Putative uncharacterized protein; PFAM: RbsD / FucU transport protein family. (134 aa)    
Predicted Functional Partners:
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.852
ADK79935.1
COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR001347; KEGG: apv:Apar_1282 sugar isomerase (SIS); PFAM: sugar isomerase (SIS); SPTR: Putative uncharacterized protein; PFAM: SIS domain.
 
     0.808
ADK79933.1
COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192:IPR017972; KEGG: dau:Daud_0011 aminotransferase, class V; PFAM: aminotransferase class V; SPTR: Aminotransferase, class V; PFAM: Aminotransferase class-V.
       0.756
ADK79932.1
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515:IPR010065; KEGG: dat:HRM2_15310 ABC-type amino acid transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type amino acid transporter, permease component; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Ar [...]
       0.740
ADK79931.1
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515:IPR010065; KEGG: aco:Amico_0415 polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Amino acid ABC superfamily ATP binding cassette transporter, amino acid-binding/permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transpor [...]
       0.705
ADK82706.1
Transcriptional regulator, LacI family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: two-component sensor histidine kinase/response regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-); PFAM: Bacterial regulatory proteins, lacI family; family.
  
  
 0.606
ADK79930.1
ABC transporter related protein; COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: cyb:CYB_0933 polar amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Polar amino amino acid ABC transporter (PAAT) family, ATP-binding protein; PFAM: ABC transporter.
       0.581
ADK80167.1
RbsD or FucU transport; COGs: COG4154 Fucose dissimilation pathway protein FucU; InterPro IPR007721; KEGG: pjd:Pjdr2_1349 RbsD or FucU transport; PFAM: RbsD or FucU transport; SPTR: Fucose operon protein FucU; PFAM: RbsD / FucU transport protein family; Belongs to the RbsD / FucU family.
  
   
 0.530
ADK80397.1
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: bpd:BURPS668_1853 putative ribose ABC transporter, periplasmic ribose-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: Putative ribose transport system, substrate-binding protein; PFAM: family.
 
  
 0.511
ADK80394.1
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: rhi:NGR_c17380 putative ribose transport system, substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: Putative ribose transport system, substrate-binding protein; PFAM: family.
 
  
 0.496
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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