STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK80163.1COGs: COG5618 periplasmic lipoprotein; InterPro IPR014582; KEGG: rec:RHECIAT_PC0000970 hypothetical protein; PFAM: periplasmic lipoprotein; SPTR: Putative uncharacterized protein; PFAM: Predicted periplasmic lipoprotein (DUF2291). (224 aa)    
Predicted Functional Partners:
ADK80165.1
Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: sme:SM_b20352 sugar ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component.
 
     0.936
ADK80164.1
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: mlo:mll7012 ribose ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ATP-binding D-ribose transport protein (ABC superfamily, atp_bind); PFAM: ABC transporter.
 
     0.934
ADK80166.1
COGs: COG2407 L-fucose isomerase and related protein; InterPro IPR012889:IPR015888; KEGG: bvu:BVU_0356 hypothetical protein; PFAM: L-fucose isomerase-like-like; L-fucose isomerase _2 domain protein; SPTR: Putative uncharacterized protein; PFAM: L-fucose isomerase, C-terminal domain.
 
     0.922
ADK80162.1
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: rec:RHECIAT_PC0000969 probable ribose ABC transporter, substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: Probable ABC transporter sugar-binding protein; PFAM: family.
 
    0.901
ADK79386.1
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: monosacharide ABC transporter periplasmic monosacharide-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: ABC transporter, periplasmic sugar binding protein; PFAM: family.
 
    0.785
ADK79389.1
Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: sme:SM_b20352 sugar ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component.
 
     0.772
ADK79388.1
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: mlo:mll7012 ribose ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
 
     0.662
ADK80167.1
RbsD or FucU transport; COGs: COG4154 Fucose dissimilation pathway protein FucU; InterPro IPR007721; KEGG: pjd:Pjdr2_1349 RbsD or FucU transport; PFAM: RbsD or FucU transport; SPTR: Fucose operon protein FucU; PFAM: RbsD / FucU transport protein family; Belongs to the RbsD / FucU family.
       0.657
ADK80160.1
Transketolase central region; COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475:IPR005476; KEGG: kpu:KP1_1545 putative transketolase C-terminal subunit; PFAM: Transketolase central region; Transketolase domain protein; SPTR: Putative transketolase C-terminal subunit; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain.
 
     0.656
ADK80161.1
Transketolase domain protein; COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: asu:Asuc_0171 transketolase domain-containing protein; PFAM: Transketolase domain protein; SPTR: Transketolase domain protein; PFAM: Transketolase, thiamine diphosphate binding domain.
 
     0.615
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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