STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK80217.1Protein of unknown function DUF955; COGs: COG2856 Zn peptidase; InterPro IPR001387:IPR010359; KEGG: dae:Dtox_3877 helix-turn-helix domain protein; PFAM: protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Helix-turn-helix domain protein; PFAM: Helix-turn-helix; Domain of unknown function (DUF955). (376 aa)    
Predicted Functional Partners:
ADK82697.1
Protein of unknown function DUF955; COGs: COG2856 Zn peptidase; InterPro IPR001387:IPR010359; KEGG: adg:Adeg_0686 helix-turn-helix domain protein; PFAM: protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Helix-turn-helix domain protein; PFAM: Helix-turn-helix; Domain of unknown function (DUF955).
 
  
 0.843
ADK80216.1
KEGG: swo:Swol_2247 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.791
ADK80218.1
Hypothetical protein.
       0.543
ADK80219.1
KEGG: ppg:PputGB1_4162 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.416
ADK80220.1
Hypothetical protein.
       0.416
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.413
ADK82457.1
Protein of unknown function DUF955; COGs: COG2856 Zn peptidase; InterPro IPR001387:IPR010359; KEGG: plt:Plut_1806 hypothetical protein; PFAM: protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix; Domain of unknown function (DUF955).
 
  
0.410
ADK82650.1
LmbE family protein; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: ace:Acel_0374 LmbE family protein; PFAM: LmbE family protein; SPTR: LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.404
lexA
Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
     
 0.401
ADK82445.1
Transcriptional regulator, XRE family; COGs: COG0280 Phosphotransacetylase; InterPro IPR001387:IPR013096:IPR002505; KEGG: ddf:DEFDS_1240 phosphate butyryltransferase; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; phosphate acetyl/butaryl transferase; SMART: helix-turn-helix domain protein; SPTR: Phosphate butyryltransferase; PFAM: Cupin domain; Phosphate acetyl/butaryl transferase; Helix-turn-helix.
  
  
 0.400
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.