STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK80337.1Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR000485:IPR019888; KEGG: pho:PH1692 transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: Putative uncharacterized protein; PFAM: AsnC family. (145 aa)    
Predicted Functional Partners:
ADK80336.1
COGs: COG4721 membrane protein; InterPro IPR017195; KEGG: mgi:Mflv_0970 ABC transporter, permease protein; PFAM: ABC-type thiamin-related transport system, permease component 1, predicted; SPTR: ABC transporter, permease protein; PFAM: ABC-type cobalt transport system, permease component.
     
 0.713
ADK80335.1
Creatininase; COGs: COG1402 Uncharacterized protein putative amidase; InterPro IPR003785; KEGG: uncharacterized protein, putative amidase; PFAM: Creatininase; SPTR: Creatininase; PFAM: Creatinine amidohydrolase.
       0.572
ADK80338.1
YbaK/prolyl-tRNA synthetase associated region; COGs: COG2606 conserved hypothetical protein; InterPro IPR007214; KEGG: emi:Emin_0821 YbaK/prolyl-tRNA synthetase associated region; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: YbaK/prolyl-tRNA synthetase associated region; PFAM: YbaK / prolyl-tRNA synthetases associated domain.
 
     0.533
ADK80333.1
COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: rci:LRC327 putative ABC-type cobalt import system, permease component; PFAM: cobalt transport protein; SPTR: Putative ABC-type cobalt import system, permease component; PFAM: Cobalt transport protein.
     
 0.524
ADK80334.1
ABC transporter related protein; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR017871:IPR003439:IPR003593; KEGG: mba:Mbar_A3550 cobalt transport ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Cobalt transport ATP-binding protein; PFAM: ABC transporter; TIGRFAM: cobalt transport protein ATP-binding subunit.
       0.519
ADK81442.1
COGs: COG0069 Glutamate synthase domain 2; InterProIPR000583:IPR006982:IPR002932:IPR002489:IPR 017932; KEGG: sus:Acid_3816 glutamate synthase (NADH) large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (NADH) large subunit; PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
     
 0.467
ADK82450.1
Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR019888:IPR000485:IPR001845:IPR019887:IPR 019885; KEGG: pat:Patl_2996 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; regulatory protein ArsR; SMART: Transcription regulator, AsnC-type; SPTR: Lrp/AsnC family transcriptional regulator; PFAM: MarR family; AsnC family.
  
     0.401
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.