STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK80532.1Hypothetical protein; KEGG: lma:LmjF27.0240 kinetoplast-associated protein-like protein; SPTR: Kinetoplast-associated protein-like protein. (243 aa)    
Predicted Functional Partners:
ADK80531.1
KEGG: tde:TDE2433 treponemal membrane protein, putative; SPTR: Treponemal membrane protein, putative.
       0.782
ADK80533.1
KEGG: aap:NT05HA_1711 hypothetical protein; SPTR: Membrane protein, putative.
       0.437
ADK80530.1
COGs: COG3920 Signal transduction histidine kinase; InterProIPR018771:IPR013656:IPR011495:IPR003594:IPR 000014; KEGG: cts:Ctha_0145 signal transduction histidine kinase; PFAM: Transcriptional regulator, histidine kinase sensor-like; PAS fold-4 domain protein; histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Predicted histidine kinase sensor domain; PAS fold; TIGRFAM: P [...]
       0.436
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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