STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK80575.1Fumarate lyase; COGs: COG0114 Fumarase; InterPro IPR020557:IPR000362:IPR003031:IPR018951; KEGG: ddf:DEFDS_0234 fumarate hydratase class II; PFAM: fumarate lyase; Fumarase C-like; SPTR: Fumarate hydratase, class II; PFAM: Fumarase C C-terminus; Lyase. (466 aa)    
Predicted Functional Partners:
ADK83099.1
COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterProIPR001041:IPR006058:IPR017900:IPR004489:IPR 017896; KEGG: dvm:DvMF_1127 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; SPTR: Succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein.
 
 0.982
ADK82692.1
COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953:IPR010960; KEGG: ctc:CTC01522 fumarate reductase flavoprotein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PRIAM: Succinate dehydrogenase; SPTR: Fumarate reductase flavoprotein; TIGRFAM: flavocytochrome c; PFAM: FAD binding domain; TIGRFAM: flavocytochrome c; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
 
 0.969
ADK82695.1
COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR007329:IPR003953:IPR002202:IPR010960; KEGG: aoe:Clos_0390 flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase; TIGRFAM: flavocytochrome c; PFAM: FAD binding domain; FMN-binding domain; TIGRFAM: flavocytochrome c.
 
 0.963
ADK79985.1
COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR007329:IPR003953; KEGG: dap:Dacet_2091 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; SPTR: Fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PFAM: FAD binding domain; FMN-binding domain.
  
 0.960
ADK79986.1
COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR007329:IPR003953; KEGG: ddc:Dd586_0833 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; SPTR: Putative uncharacterized protein; PFAM: FAD binding domain; FMN-binding domain.
  
 0.960
ADK79435.1
COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR013027:IPR003953; KEGG: shi:Shel_26410 succinate dehydrogenase/fumarate reductase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: Succinate dehydrogenase/fumarate reductase flavoprotein subunit; PFAM: FAD binding domain.
  
 0.958
ADK80121.1
Malic protein NAD-binding protein; COGs: COG0281 Malic enzyme; InterPro IPR015884:IPR012301:IPR012302; KEGG: bhy:BHWA1_01613 malate dehydrogenase; PFAM: malic protein NAD-binding; malic protein domain protein; SPTR: Malate dehydrogenase; PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain.
  
 
 0.956
ADK81650.1
COGs: COG0372 Citrate synthase; InterPro IPR002020; KEGG: mta:Moth_1122 citrate synthase; PFAM: Citrate synthase; SPTR: Citrate (Si)-synthase; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
 0.894
argH
COGs: COG0165 Argininosuccinate lyase; InterPro IPR009049:IPR020557:IPR000362:IPR003031; KEGG: ttr:Tter_0314 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase.
   
 
0.833
ADK79390.1
Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR001176:IPR004839:IPR004838; KEGG: cce:Ccel_1965 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II.
   
 0.829
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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