STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK80584.1COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890:IPR011625:IPR001599; KEGG: scl:sce4409 hypothetical protein; PFAM: alpha-2-macroglobulin domain protein 2; alpha-2-macroglobulin domain protein; alpha-2-macroglobulin; SPTR: Alpha-2-macroglobulin family N-region; PFAM: MG2 domain; Alpha-2-macroglobulin family; Alpha-2-macroglobulin MG1 domain; Alpha-2-macroglobulin family N-terminal region. (1944 aa)    
Predicted Functional Partners:
ADK80585.1
Peptidoglycan glycosyltransferase; COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterPro IPR001264:IPR001460; KEGG: npu:Npun_R3281 penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 1C; manually curated; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C.
 
   
 0.960
nrdR
ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
 
 
   0.746
ADK80583.1
KEGG: hoh:Hoch_5250 protein of unknown function DUF1707; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2154); Domain of unknown function (DUF1707).
       0.658
ADK81475.1
KEGG: cts:Ctha_0299 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: FecR protein.
  
     0.637
ADK82298.1
KEGG: tde:TDE2293 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.601
ADK80070.1
KEGG: tde:TDE0194 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.592
ADK82766.1
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: tde:TDE2434 polysaccharide deacetylase family protein; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase.
  
     0.561
ADK80863.1
Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR000595:IPR001440:IPR013105:IPR019734:IPR 013026; KEGG: bhy:BHWA1_00483 cAMP-binding protein; PFAM: cyclic nucleotide-binding; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SPTR: Cyclic nucleotide-binding protein with tetratricopeptide repeat; PFAM: Cyclic nucleotide-binding domain.
  
    0.559
ADK82304.1
TPR repeat-containing protein; InterProIPR019734:IPR006597:IPR013026:IPR001440:IPR 011717; KEGG: rmr:Rmar_1517 outer membrane assembly lipoprotein YfiO; PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_4; SPTR: Outer membrane assembly lipoprotein YfiO.
  
    0.555
ADK83228.1
COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: tde:TDE2028 OmpA family protein; SPTR: OmpA family protein; PFAM: OmpA family.
  
    0.550
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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