STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK80645.1KEGG: pmx:PERMA_0993 hypothetical protein; SPTR: Putative uncharacterized protein. (381 aa)    
Predicted Functional Partners:
ADK80644.1
Hypothetical protein; KEGG: sde:Sde_1294 polyhydroxyalkanoate synthesis repressor PhaR; SPTR: VCBS domain protein.
       0.752
ADK80646.1
KEGG: nph:NP1756A transducer protein htr22; SPTR: Putative uncharacterized protein.
       0.708
ADK80647.1
KEGG: tde:TDE1884 hypothetical protein; SPTR: Putative uncharacterized protein.
      
0.660
ADK80641.1
Protein of unknown function DUF583; COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: tde:TDE1888 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF583.
       0.520
ADK80642.1
TPR repeat-containing protein; InterPro IPR001440:IPR019734:IPR013026; KEGG: tde:TDE1887 TPR domain-containing protein; PFAM: TPR repeat-containing protein; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat.
       0.503
ADK80643.1
MiaB-like tRNA modifying enzyme; COGs: COG0621 2-methylthioadenine synthetase; InterProIPR013848:IPR007197:IPR005839:IPR006467:IPR 006638; KEGG: tde:TDE1886 MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family.
       0.491
ADK80640.1
COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: cbc:CbuK_0855 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase.
       0.422
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.