STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK80712.1KEGG: tde:TDE2684 hypothetical protein; SPTR: Putative uncharacterized protein. (204 aa)    
Predicted Functional Partners:
ADK80713.1
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR014284:IPR012845:IPR000943:IPR007627:IPR 007624:IPR007630; KEGG: lic:LIC11380 RNA polymerase sigma factor WhiG; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; SPTR: RNA polymerase sigma-D factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma fact [...]
       0.805
ADK80716.1
KEGG: bhr:BH0265 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.763
ADK80714.1
Protein of unknown function DUF342; COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: tde:TDE2682 hypothetical protein; PFAM: protein of unknown function DUF342; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF342).
       0.753
ADK80715.1
KEGG: tde:TDE2681 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.750
ADK80718.1
Heat shock protein DnaJ domain protein; COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR003095:IPR001623:IPR017441; KEGG: rci:RCIX1090 Zn-finger protein interacting with DnaK (DnaJ-like); PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Predicted Zn-finger protein interacting with DnaK (DnaJ-like); PFAM: DnaJ domain.
       0.745
ADK80717.1
Heat shock protein 70; COGs: COG0443 Molecular chaperone; InterPro IPR001023:IPR013126:IPR018181; KEGG: tit:Thit_0894 chaperone protein DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein DnaK; PFAM: Hsp70 protein.
       0.730
ADK80719.1
CheA signal transduction histidine kinase; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR004358:IPR003594:IPR010916:IPR008207:IPR 005467; KEGG: tte:TTE1417 chemotaxis protein histidine kinase-like kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; Hpt domain protein; SPTR: Chemotaxis protein histidine kinase and related kinases; PFAM: P2 response regulator binding domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hpt domain.
       0.730
ADK80720.1
COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR017871:IPR003593; KEGG: pca:Pcar_1361 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative ATP-binding component of a transport system; PFAM: ABC transporter.
       0.656
ADK80721.1
PfkB domain protein; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611:IPR002173; KEGG: mma:MM_3131 fructokinase; PFAM: PfkB domain protein; SPTR: Fructokinase; PFAM: pfkB family carbohydrate kinase.
       0.656
ADK80710.1
COGs: COG1419 Flagellar GTP-binding protein; InterPro IPR020006:IPR000897:IPR019793:IPR003593; KEGG: baf:BAPKO_0280 flagellar biosynthesis regulator FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; SPTR: Flagellar-associated GTP-binding protein; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF.
       0.632
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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