STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK80714.1Protein of unknown function DUF342; COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: tde:TDE2682 hypothetical protein; PFAM: protein of unknown function DUF342; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF342). (648 aa)    
Predicted Functional Partners:
ADK80713.1
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR014284:IPR012845:IPR000943:IPR007627:IPR 007624:IPR007630; KEGG: lic:LIC11380 RNA polymerase sigma factor WhiG; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; SPTR: RNA polymerase sigma-D factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma fact [...]
 
    0.830
ADK80702.1
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
     0.820
ADK80716.1
KEGG: bhr:BH0265 hypothetical protein; SPTR: Putative uncharacterized protein.
     
 0.813
ADK80718.1
Heat shock protein DnaJ domain protein; COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR003095:IPR001623:IPR017441; KEGG: rci:RCIX1090 Zn-finger protein interacting with DnaK (DnaJ-like); PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Predicted Zn-finger protein interacting with DnaK (DnaJ-like); PFAM: DnaJ domain.
   
 
 0.806
ADK80691.1
Flagellar assembly protein FliH/Type III secretion system HrpE; COGs: COG1317 Flagellar biosynthesis/type III secretory pathway protein; InterPro IPR018035; KEGG: tde:TDE1217 flagellar assembly protein H; PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; SPTR: Flagellar assembly protein fliH, putative; PFAM: Flagellar assembly protein FliH.
 
     0.805
ADK80717.1
Heat shock protein 70; COGs: COG0443 Molecular chaperone; InterPro IPR001023:IPR013126:IPR018181; KEGG: tit:Thit_0894 chaperone protein DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein DnaK; PFAM: Hsp70 protein.
     
 0.795
ADK80715.1
KEGG: tde:TDE2681 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.789
ADK80719.1
CheA signal transduction histidine kinase; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR004358:IPR003594:IPR010916:IPR008207:IPR 005467; KEGG: tte:TTE1417 chemotaxis protein histidine kinase-like kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; Hpt domain protein; SPTR: Chemotaxis protein histidine kinase and related kinases; PFAM: P2 response regulator binding domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hpt domain.
  
    0.788
ADK80686.1
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
     0.778
ADK80711.1
Cobyrinic acid ac-diamide synthase; COGs: COG0455 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: tpp:TPASS_0712 ATP-binding protein; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: ATP-binding protein (YlxH-1); PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
   
 0.773
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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