STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK81006.1Protein of unknown function UPF0102; COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509; KEGG: dvl:Dvul_2148 hypothetical protein; PFAM: protein of unknown function UPF0102; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: conserved hypothetical protein TIGR00252. (120 aa)    
Predicted Functional Partners:
ADK81004.1
Type III secretion exporter; COGs: COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; InterPro IPR006135; KEGG: cjd:JJD26997_0996 FlhB domain-containing protein; PFAM: type III secretion exporter; SPTR: FlhB domain protein; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flhB C-terminus-related protein.
       0.800
ADK81005.1
Metal dependent phosphohydrolase; COGs: COG2206 HD-GYP domain; InterPro IPR003607:IPR006674; KEGG: tde:TDE2302 HD domain-containing protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: HD domain protein; PFAM: HD domain.
       0.800
ADK81003.1
Hypothetical protein; KEGG: lxx:Lxx13710 serine protease; SPTR: Serine protease.
       0.775
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.688
ADK80576.1
COGs: COG2200 FOG: EAL domain; InterProIPR001789:IPR013767:IPR000160:IPR001633:IPR 000014; KEGG: tgr:Tgr7_1990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein; SPTR: Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain; GGDEF domain [...]
  
    0.583
ADK80999.1
COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR020627; KEGG: bhy:BHWA1_02049 R-binding protein (contains KH domain); SPTR: R-binding protein (Contains KH domain); Belongs to the UPF0109 family.
       0.578
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.578
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.578
ADK81448.1
Mg chelatase, subunit ChlI; COGs: COG0606 ATPase with chaperone activity; InterPro IPR001208:IPR003593:IPR000523:IPR004482; KEGG: tde:TDE1995 magnesium chelatase family protein; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; SPTR: Magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein.
 
  
 0.529
rpsP
COGs: COG0228 Ribosomal protein S16; InterPro IPR000307; KEGG: tde:TDE0881 ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
       0.526
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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