STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK81090.1KEGG: tde:TDE1170 DNA-binding protein; SPTR: DNA-binding protein; manually curated; PFAM: Bacteriophage CI repressor helix-turn-helix domain. (126 aa)    
Predicted Functional Partners:
ADK81088.1
Conserved hypothetical protein; COGs: COG0433 ATPase; KEGG: hmo:HM1_1331 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.453
ADK81089.1
KEGG: hmo:HM1_1332 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.443
ADK81086.1
KEGG: hmo:HM1_1329 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.425
ADK81087.1
KEGG: hmo:HM1_1330 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.425
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.