STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK81537.1KEGG: tde:TDE0840 hypothetical protein; SPTR: Putative uncharacterized protein. (503 aa)    
Predicted Functional Partners:
ADK81535.1
Von Willebrand factor type A; InterPro IPR002035; KEGG: tde:TDE0841 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Putative uncharacterized protein; PFAM: von Willebrand factor type A domain.
     
 0.846
ADK81536.1
Phosphoesterase RecJ domain protein; COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: sat:SYN_01784 phosphoesterase, DHH family protein; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Phosphoesterase, DHH family protein; PFAM: DHHA1 domain; DHH family.
     
 0.774
ADK80915.1
COGs: COG4786 Flagellar basal body rod protein; InterPro IPR020013:IPR012836:IPR001444:IPR010930; KEGG: bre:BRE_783 flagellar hook-basal body complex protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: Flagellar hook-basal body complex protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins.
   
 
 0.699
ADK82798.1
KEGG: sli:Slin_1741 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.623
ADK81145.1
Outer membrane chaperone Skp (OmpH); InterPro IPR005632; KEGG: tde:TDE2602 outer membrane protein, putative; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein, putative; PFAM: Outer membrane protein (OmpH-like).
  
 
 0.574
ADK81534.1
KEGG: tde:TDE0842 cytoplasmic filament protein A; SPTR: Cytoplasmic filament protein A; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
       0.543
ADK79763.1
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR002880:IPR019752:IPR019456:IPR001450:IPR 011766:IPR017900:IPR017896:IPR011895; KEGG: tde:TDE0665 pyruvate ferredoxin/flavodoxin oxidoreductase family protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: Pyruvate ferredoxin/flavodoxin oxi [...]
  
 
 0.518
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.509
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
 
 0.479
ADK81961.1
Lytic transglycosylase catalytic; InterPro IPR008258:IPR018392:IPR002482; KEGG: tde:TDE2149 Slt family transglycosylase; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Transglycosylase, SLT family; PFAM: Transglycosylase SLT domain; LysM domain.
  
 
 0.479
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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