STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK81554.1PpiC-type peptidyl-prolyl cis-trans isomerase; InterPro IPR000297; KEGG: bre:BRE_110 basic membrane protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: Basic membrane protein; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain. (358 aa)    
Predicted Functional Partners:
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.818
ADK81555.1
KEGG: hor:Hore_18090 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.816
map-2
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
     
 0.789
ADK81556.1
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
  
 0.780
ADK81552.1
Hypothetical protein; InterPro IPR019734:IPR013026; KEGG: mma:MM_0103 O-linked N-acetylglucosamine transferase; SPTR: Putative uncharacterized protein.
       0.773
ADK81550.1
Protease Do; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001940:IPR001478:IPR001254:IPR011782; KEGG: tde:TDE2300 trypsin domain/PDZ domain-containing protein; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Trypsin domain/PDZ domain protein; TIGRFAM: protease Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family.
     
 0.770
ADK81549.1
COGs: COG2236 phosphoribosyltransferase; KEGG: bbz:BbuZS7_0103 phosphoribosyl transferase domain protein; SPTR: Phosphoribosyl transferase domain protein; PFAM: Phosphoribosyl transferase domain.
 
    0.745
ADK81565.1
COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: tde:TDE1011 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.672
ADK81144.1
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR016474; KEGG: tde:TDE2601 surface antigen, putative; PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: Outer membrane protein 88; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; outer membrane protein assembly complex, YaeT protein.
 
 
 0.631
yidC
Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
  
 0.618
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.