STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK82119.1Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: tit:Thit_1138 transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix domain, rpiR family; SIS domain. (283 aa)    
Predicted Functional Partners:
ADK79572.1
Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: tma:TM0326 RpiR family transcriptional regulator; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: Uncharacterized HTH-type transcriptional regulator TM_0326; PFAM: Helix-turn-helix domain, rpiR family; SIS domain.
  
     0.774
ADK80292.1
Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: cac:CAC0191 RpiR family transcriptional regulator; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; SPTR: Uncharacterized HTH-type transcriptional regulator CA_C0191; PFAM: Helix-turn-helix domain, rpiR family; SIS domain.
  
     0.773
ADK79853.1
Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: sme:SMa0520 transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: Transcriptional regulator, RpiR family; PFAM: Helix-turn-helix domain, rpiR family; SIS domain.
  
     0.661
ADK82117.1
Na+/solute symporter; COGs: COG4145 Na+/panthothenate symporter; InterPro IPR001734; KEGG: lhk:LHK_00848 sodium/pantothenate symporter precursor; PFAM: Na+/solute symporter; SPTR: Putative uncharacterized protein; PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     
 0.510
ADK82116.1
Creatininase; COGs: COG1402 Uncharacterized protein putative amidase; InterPro IPR003785; KEGG: aco:Amico_0022 creatininase; PFAM: Creatininase; SPTR: Putative uncharacterized protein; PFAM: Creatinine amidohydrolase.
       0.489
ADK82118.1
KEGG: cro:ROD_15261 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.489
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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