STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK82309.1Lipoprotein LpqB, GerMN domain protein; COGs: COG5401 Spore germination protein; InterPro IPR019606; KEGG: tde:TDE2081 hypothetical protein; PFAM: Lipoprotein LpqB, GerMN domain; SPTR: Putative uncharacterized protein; PFAM: Sporulation and spore germination. (257 aa)    
Predicted Functional Partners:
ADK82298.1
KEGG: tde:TDE2293 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
   0.871
ADK79481.1
KEGG: tde:TDE2751 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.763
ADK80453.1
Protein of unknown function YGGT; InterPro IPR003425; KEGG: btu:BT0580 integral membrane protein, YggT family; PFAM: protein of unknown function YGGT; SPTR: Yggt family protein; PFAM: YGGT family.
  
     0.755
ADK81565.1
COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: tde:TDE1011 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.753
ADK80934.1
Conserved hypothetical protein; COGs: COG1316 Transcriptional regulator; KEGG: tpp:TPASS_0739 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cell envelope-related transcriptional attenuator domain.
  
     0.751
ADK82766.1
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: tde:TDE2434 polysaccharide deacetylase family protein; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase.
  
    0.748
ADK81203.1
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: tde:TDE2028 OmpA family protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA family protein; PFAM: OmpA family.
  
     0.740
ADK80642.1
TPR repeat-containing protein; InterPro IPR001440:IPR019734:IPR013026; KEGG: tde:TDE1887 TPR domain-containing protein; PFAM: TPR repeat-containing protein; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat.
  
   
 0.735
ADK82304.1
TPR repeat-containing protein; InterProIPR019734:IPR006597:IPR013026:IPR001440:IPR 011717; KEGG: rmr:Rmar_1517 outer membrane assembly lipoprotein YfiO; PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_4; SPTR: Outer membrane assembly lipoprotein YfiO.
 
     0.726
ADK80668.1
COGs: COG3330 conserved hypothetical protein; KEGG: tde:TDE1093 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.717
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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