STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK82369.1InterPro IPR018649; KEGG: afe:Lferr_0168 hypothetical protein; PFAM: Protein of unknown function DUF2078, membrane; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2078). (222 aa)    
Predicted Functional Partners:
ADK82371.1
Copper-translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; InterProIPR001757:IPR000695:IPR008250:IPR005834:IPR 006403:IPR006416:IPR018303; KEGG: copper-transporting ATPase, P-type (CopB); PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Copper-transporting ATPase, P-type (CopB); TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocati [...]
       0.708
ADK82370.1
InterPro IPR018649; KEGG: afr:AFE_1333 hypothetical protein; PFAM: Protein of unknown function DUF2078, membrane; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2078).
       0.705
ADK82372.1
Hypothetical protein; KEGG: rbo:A1I_05800 NADH dehydrogenase subunit E; SPTR: Putative uncharacterized protein; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit.
       0.478
ADK82373.1
COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterPro IPR017896:IPR001450:IPR004108:IPR017900; KEGG: apr:Apre_1371 hydrogenase large subunit domain protein; PFAM: hydrogenase large subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Putative uncharacterized protein; PFAM: Iron only hydrogenase large subunit, C-terminal domain; 4Fe-4S binding domain.
       0.478
ADK82368.1
InterPro IPR000835; KEGG: dhd:Dhaf_2244 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family.
       0.455
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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