STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK82528.1COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); KEGG: cno:NT01CX_0354 metallo-beta-lactamase superfamily protein; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily. (323 aa)    
Predicted Functional Partners:
ADK82527.1
COGs: COG3181 conserved hypothetical protein; InterPro IPR005064; KEGG: pmu:PM1679 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Twin-arginine translocation pathway signal; PFAM: Tripartite tricarboxylate transporter family receptor.
 
     0.809
ADK82529.1
Transcriptional regulator, LacI family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: transcriptional regulator family protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Periplasmic binding protein/LacI transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family.
 
   
 0.801
ADK82526.1
KEGG: pmu:PM1680 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.596
ADK82531.1
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dol:Dole_0806 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein.
 
     0.592
ADK82525.1
Protein of unknown function DUF112 transmembrane; COGs: COG3333 conserved hypothetical protein; InterPro IPR002823; KEGG: pmu:PM1681 hypothetical protein; PFAM: protein of unknown function DUF112 transmembrane; SPTR: Putative uncharacterized protein; PFAM: Tripartite tricarboxylate transporter TctA family.
       0.580
ADK82532.1
Secretion protein HlyD family protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: dol:Dole_0807 secretion protein HlyD family protein; PFAM: secretion protein HlyD family protein; SPTR: Secretion protein HlyD family protein; PFAM: HlyD family secretion protein.
     
 0.519
ADK81147.1
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: tde:TDE0972 ComF-related protein; PFAM: phosphoribosyltransferase; SPTR: ComF-related protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
  
  
 0.516
ADK82535.1
ABC-2 type transporter; COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525:IPR013526:IPR000412; KEGG: dol:Dole_0810 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter; TIGRFAM: ABC transporter efflux protein, DrrB family.
       0.506
ADK82536.1
ABC-2 type transporter; COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525:IPR000412; KEGG: dol:Dole_0811 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter.
       0.506
ADK82530.1
InterPro IPR001647; KEGG: dol:Dole_0805 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
       0.485
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.