STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK82618.1Methyltransferase type 12; InterPro IPR013217; KEGG: dae:Dtox_2658 O-methyltransferase family 2; PFAM: Methyltransferase type 12; SPTR: O-methyltransferase family 2; PFAM: O-methyltransferase. (382 aa)    
Predicted Functional Partners:
ADK82616.1
Methyltransferase type 12; InterPro IPR013217:IPR010916; KEGG: dae:Dtox_2658 O-methyltransferase family 2; PFAM: Methyltransferase type 12; SPTR: Putative uncharacterized protein; PFAM: O-methyltransferase.
 
    
0.688
ADK82619.1
Binding-protein-dependent transport systems inner membrane component; COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: clo:HMPREF0868_0379 ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  
 0.640
ADK82597.1
InterPro IPR000835; KEGG: cac:CAC0559 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family.
 
  
 0.633
ADK82617.1
KEGG: apo:Arcpr_0152 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.620
obg
GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
   
  
 0.599
ADK82929.1
Methyltransferase type 11; InterPro IPR013216; KEGG: mmz:MmarC7_1469 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Ribosomal RNA adenine dimethylase.
 
  
 0.519
ADK82620.1
Extracellular solute-binding protein family 1; COGs: COG4134 ABC-type uncharacterized transport system periplasmic component; InterPro IPR006059; KEGG: clo:HMPREF0868_0378 bacterial extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Bacterial extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein.
       0.459
rlmL
rRNA (guanine-N(2)-)-methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
   
  
 0.455
rplA
Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
  
  
 0.455
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
  
 0.451
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.